PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g032600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 292aa    MW: 31103.4 Da    PI: 5.4599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g032600.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10175222455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Sopen03g032600.1 175 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 222
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-18169241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-9169226No hitNo description
Gene3DG3DSA:4.10.280.104.4E-18171240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-8175222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDPPIINEGS FSAANPSSYS LAEIWPFAAA ANGGGNGELG GGGLGLRMSS FTGLLEAAAN  60
SINESTLTEQ SRRSGGAGGG DGSGSGGGNV GVRKRDMNSE DDFSKFVSTS DANDLDGSVA  120
KRLKGSQSKE ENGVSKVEAE SSSQTANKGT EQSSKPEPPK DYIHVRARRG QATDSHSLAE  180
RARREKISER MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNSRMN  240
HPIETFPSKD LAPSAFDTSG MIFGTQAPRE YAQGTQPEWL HMQVGNSFDR AT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067856.10.0PREDICTED: transcription factor bHLH79-like isoform X2
SwissprotQ9LV171e-84BH079_ARATH; Transcription factor bHLH79
TrEMBLM1C9L80.0M1C9L8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628441e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-81bHLH family protein